rs30468611 SNP Detail

Summary

• ID
  rs30468611
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18433731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTCCATG GACTTCAACC
  CACTATTTTC AGGTTATTTT CAAGAAAAGC ACTTAGAGTG ATGAAGCCAC AATTCATAGA
  GCAAGATGAA TCACCATCAC CCCAGAGCCT TAAAGAAAAC TTCCAAAAGA AATTTAAAAA
  AGGAAAGAGA GGGAGAGAGA AGAAAAGAAA TGAGGAAGTG GGTGAAGAGA GTATTAAAAA
  Y
  GTTTTAAGAC AACATAAAAG AAGTTAAGAG AGGTCAGAGA ATAGGGCACA TTCTTTACAA
  AAGGGTAGAA GACTTCAATC CCTTTACCTG ATGCTGCTAC CAAGAGGCTG TCTGAGGCAC
  CGGGGCTACG GGATGAGGCA CTAACAGGGT TTATGGAAGA GCAAAAGGCA ACGGTGGCGG
  GAATGACAAG GGAGCTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45933492	mCV23958981	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss133034763	ENSMUSSNP1196381	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30468611					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18433731 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm40356	predicted gene, 40356			1710 bp upstream
Gm67618	predicted gene, 67618			1305 bp upstream
Rr626922	regulatory region 626922			815 bp proximal
Rr626923	regulatory region 626923			1010 bp proximal