rs30468558 SNP Detail

Summary

• ID
  rs30468558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56881678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTCCTAA GGGAGTGAAG
  GCATACAGCT GCTAAGTAGC AGCAATAGAT TCAGTGTAAA AGCACAGGGA GCCTAAAATA
  GGACACATGA TAGGATTCAT GGCAGCACTA ACAGCCTTCC TTCATTGCCT GAGTGGGAAA
  ATAAACAGTG TTTAAATGTG ACAGTCAGCA GCAAGTGACA TTAATTTTGT CCATGATCAG
  R
  AAAGCTGAAG CGTATTCTGA TACAAGGACC TGAAGTGGAG CCAGTGCTTC ATCGCTCACC
  CAGTTCTTCA GGGAGAAGGC AGAGGGGTTG CATGCTTCAG ACCACAAAGG CCACATAGCA
  AGATCTTGTC TAAAACATAA AAATACAAAT CTCTTCTTGA GGGACTTAGA TTTATCAAAG
  CCTGAGCAGT ATTTGTTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss45933043	mCV23495493	ABI	CRAMUS_MOUSE	f	SNP	G	A					A		A
ss60887164	NES15965979	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A		A	A	A	G	G	A	A
ss133233768	ENSMUSSNP3789737	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs30468558					SNP	G	A	A	A	A	A	A	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60887164	NES15965979	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56881678 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm3793	predicted gene 3793			1218 bp downstream
Gm53332	predicted gene, 53332			within coordinates
Nt5c3	5'-nucleotidase, cytosolic III			Intron
				Noncoding-Transcript-Variant
Rr379412	regulatory region 379412			1873 bp downstream
Rr631117	regulatory region 631117			1605 bp distal
Rr631118	regulatory region 631118			1521 bp distal
Rr631119	regulatory region 631119			1203 bp distal
Rr631120	regulatory region 631120			77 bp distal
Rr631121	regulatory region 631121			198 bp proximal
Rr631122	regulatory region 631122			1498 bp proximal