rs30468529 SNP Detail

Summary

• ID
  rs30468529
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108814951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTCTCTC CTTTGAGGAC
  CCCGTCCTTC TCTGCACACG CATCTCTCTC TCCTAACTGC ACTCTCACTT TAAATCATGG
  CTTTAGCTGG AAGGATCTCT CCTAACGGTT CATTCTGAAG GGTCATTTTC TGTTAGCTCC
  TTTTTAGGAA TCTGCCATTC TTCTCTTTAG CTTGTAACAC AGTACTTCAA GAACAAAATC
  Y
  GGAAGATTTC AGGGTCAGAA GCTACCCTAA AGTGCTTCTA GCTACTGACT TCTCAGGGGT
  GTCTGTGCAG GGTGCCTTCC TATGCATGTG GCCGTCTCTG TAGACTTCTG TTATTTCCTG
  CTTCTTGGTG TTGGCTGTTG TTTTTGATGA GGTCTACCAA GCTTCATCCT GCTTTTACAC
  TCCTTGTCCC TCATCGACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45932946	mCV24063846	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss133510237	ENSMUSSNP5643314	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss321894214	CHEV_6_108787984	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30468529					SNP	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108814951 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr368139	regulatory region 368139			1864 bp downstream
Rr368140	regulatory region 368140			1616 bp downstream
Rr368141	regulatory region 368141			1591 bp upstream
Rr636220	regulatory region 636220			1118 bp distal
Rr636221	regulatory region 636221			31 bp proximal
Rr636222	regulatory region 636222			1329 bp proximal
Tssr58109	transcription start site region 58109			1889 bp downstream
Tssr58110	transcription start site region 58110			1718 bp downstream
Tssr58111	transcription start site region 58111			1676 bp downstream
Tssr58112	transcription start site region 58112			1653 bp downstream
Tssr58113	transcription start site region 58113			1634 bp downstream
Tssr58114	transcription start site region 58114			1620 bp downstream
Tssr58115	transcription start site region 58115			1583 bp downstream
Tssr58116	transcription start site region 58116			1357 bp downstream
Tssr58117	transcription start site region 58117			1338 bp downstream
Tssr58118	transcription start site region 58118			1292 bp downstream
Tssr58119	transcription start site region 58119			1251 bp downstream
Tssr58120	transcription start site region 58120			1223 bp upstream