rs30468148 SNP Detail

Summary

• ID
  rs30468148
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148592170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATTATTC AATGCCTCGG
  CTTTTGAGGA CCTAGACATA GAAAAATTCA CTAAACTACT TGAGGTTTTG TGTGTTCAGA
  GTCAAACGGT GATATGTGCA CAGTAATTAT TCATTGACAA CCCAGCTGCA AAACCACTTC
  CTCCCTGGTT TTCCTCTGGT TCTTTCCAAC TACGCCAGTC AAATATGACA GGCTTCCTCA
  Y
  GCTTTACATC GTGATATACC ATGAATAGGG TATTTACATG CTTCCACTAT GAAAATGTTT
  TTCAAATAAT TTCAATCTTG CCTTTCCTCT TTTCAATACG GTGTTTATGT TCAAATTGTC
  AGAGTGCTGA TTAAATAATT ATAAACCAAC GAGCCACAAG TATACTACTA TTTAAAAATG
  GGTTTCAGCT GCTATATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45550041	mCV23527993	ABI	CRAMUS_MOUSE	f	SNP		C	T				C		C
ss47451039	NES10331444	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	T		T	C	C	C	C	T	C
ss136064837	ENSMUSSNP1633791	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30468148					SNP	C	C	T	C	C	T	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47451039	NES10331444	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148592170 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587220	regulatory region 587220	within coordinates
Rr587221	regulatory region 587221	1334 bp proximal