rs30467408 SNP Detail

Summary

• ID
  rs30467408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56545053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGCTCAT TTCCCAAGAG
  TATGAAGATG CCAGGCCATG ACAAGTCATT TCAAAACAGC AGAAACTCTG TAAAACTATA
  GAGGTCAGAC CTCTTCAAAT GGGAGTTAAC TCTGTGGTCA GAAATCTGCC AGACCCTTCT
  CCTCCATTCG CTCCTGGTGA ACAGTTTGGA GCAGAAGAAG AGCAGAAATA ACAACATACC
  Y
  GGGTTGGGAT TTTTTGCTTT TGTTTTTTGT TTGCTTGTTT TTTTTTTTTT TTTTAACTTT
  CCAGTGGCAA GATACATATT CCCTCCCTGC CTGCCTGAAT CTTGCCTCTA GGAGCTAGGG
  ACTCTAAACG GACCTTGCCT TAGGTCTGTC TCCCTGGAGC TCTCTCCTCT CCTCTCAGCT
  TTTGTCTTCC TATCCCAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45931779	mCV25430900	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss133228454	ENSMUSSNP3299285	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30467408					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56545053 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17476	CpG island 17476			356 bp proximal
Gm66600	predicted gene, 66600			555 bp upstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631075	regulatory region 631075			276 bp proximal
Rr631076	regulatory region 631076			1025 bp proximal
Tssr1858	transcription start site region 1858			1083 bp downstream
Tssr61134	transcription start site region 61134			853 bp downstream
Tssr61135	transcription start site region 61135			874 bp downstream
Tssr61136	transcription start site region 61136			1040 bp downstream
Tssr61137	transcription start site region 61137			1115 bp downstream