rs30467392 SNP Detail

Summary

• ID
  rs30467392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148592256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTGATATG TGCACAGTAA
  TTATTCATTG ACAACCCAGC TGCAAAACCA CTTCCTCCCT GGTTTTCCTC TGGTTCTTTC
  CAACTACGCC AGTCAAATAT GACAGGCTTC CTCACGCTTT ACATCGTGAT ATACCATGAA
  TAGGGTATTT ACATGCTTCC ACTATGAAAA TGTTTTTCAA ATAATTTCAA TCTTGCCTTT
  Y
  CTCTTTTCAA TACGGTGTTT ATGTTCAAAT TGTCAGAGTG CTGATTAAAT AATTATAAAC
  CAACGAGCCA CAAGTATACT ACTATTTAAA AATGGGTTTC AGCTGCTATA TTTAGAATGA
  TTTCCTTATT TATGCCAATG CCCCATATAT ACTTCATTTG AAGATCTGAT AATGGGCCAA
  CAGCATGTAT TCCCAGAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47451033	NES10331446	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30467392					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47451033	NES10331446	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148592256 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587220	regulatory region 587220	69 bp distal
Rr587221	regulatory region 587221	1248 bp proximal