rs30467386 SNP Detail

Summary

• ID
  rs30467386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148592421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATGTTT TTCAAATAAT
  TTCAATCTTG CCTTTCCTCT TTTCAATACG GTGTTTATGT TCAAATTGTC AGAGTGCTGA
  TTAAATAATT ATAAACCAAC GAGCCACAAG TATACTACTA TTTAAAAATG GGTTTCAGCT
  GCTATATTTA GAATGATTTC CTTATTTATG CCAATGCCCC ATATATACTT CATTTGAAGA
  Y
  CTGATAATGG GCCAACAGCA TGTATTCCCA GAATGCAATG TTTTTTTTTT CAAATACTGT
  AGCAACTAGA CATGGAGCCC TTCTGCATTC CGACTCAAGG GCAGGCTGTG TGCTTTTTAC
  ATCTAGACTG GAGTTCACCT GTAGGACACC AAGTTTGACA CTTGTACTAA ACACCTGCTG
  TGCACCTAAG TAAGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45527865	mCV23527971	ABI	CRAMUS_MOUSE	f	SNP		T	C						T
ss47451027	NES10331448	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	T	T	T	T	T	T	C	T	T
ss136064844	ENSMUSSNP1265112	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30467386					SNP	T	T	C	T	C	T	C	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47451027	NES10331448	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148592421 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587220	regulatory region 587220	234 bp distal
Rr587221	regulatory region 587221	1083 bp proximal