rs30467367 SNP Detail

Summary

• ID
  rs30467367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146049088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCTGACA GAGGGTGAAG
  TGCCCTGTGG CTGGCCATAG CACAGAGCTG GGTGGAAGTG GAGAGTCTAA TGAAAACCAG
  AGTGGTTATC ACCTTTCAGG TCCACCCCTA TTGACCAACT TCCTACAAAT TCCATAGTGT
  CAAAGGTTCT GGAAATAGCT ACAGTAGCTG AGTTCAAGCA TGTGAGCGGG TAGGGGACAT
  Y
  TGAGACTCCA TAATAACTGA GGGGCTGCTC CTTCCTTAAA TAAACTGGTT CTGAGGAATA
  TGCTCAGTGC CACAGCTTTG CTTTAAATCT CCTTGATTAT TTACCTTCAT TACAAAAATA
  ACTTGTCAAT AAAATAAACA TGATACACCA AAGTCAACCA GAACTGAAGT CAATGTATCT
  CAATGAATGT CTATGTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45433383	mCV24236778	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					T		T
ss47026566	NES10845621	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C		C	T	T	T		C	C	T		C
ss321010007	CHEV_3_146006297	CHEVERUD	SCREENING_POP	f	SNP													C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30467367					SNP	T	T	C	T	C	T	C	T	C	T	T	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026566	NES10845621	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146049088 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	1952 bp proximal
Rr587007	regulatory region 587007	841 bp distal
Rr587008	regulatory region 587008	371 bp proximal
Rr587009	regulatory region 587009	480 bp proximal
Rr587010	regulatory region 587010	1758 bp proximal