rs30467241 SNP Detail

Summary

• ID
  rs30467241
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86770313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAA GCCTAGGACA GCGGGCGAGC
  M
  CAGGATCCCG AGGTTAAGTT CAGGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45932425	mCV22848131	ABI	CRAMUS_MOUSE	f	SNP		A	A					C
ss51749437	NES14799911	PERLEGEN	MM_PANEL2	f	SNP	A		A	C	C	A	A		C	A	A	C		C	A	C	C		C
ss133359400	ENSMUSSNP5092199	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss321847287	CHEV_6_86743325	CHEVERUD	SCREENING_POP	f	SNP													C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30467241					SNP	A	A	A	C	C	A	A	C	C	A	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749437	NES14799911	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86770313 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Cpgi17670	CpG island 17670	within coordinates
Rr633515	regulatory region 633515	within coordinates
Rr633516	regulatory region 633516	243 bp proximal
Rr633517	regulatory region 633517	1635 bp proximal
Tssr61864	transcription start site region 61864	191 bp downstream
Tssr61865	transcription start site region 61865	259 bp downstream