rs30466991 SNP Detail

Summary

• ID
  rs30466991
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56879942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACACTGCA CCAGGGCCTG
  CTAGATAAGG TGGCACTCGG GTTCCGGGAA CTTTATCATT AGGGCCATGG TTAAGCAGTT
  TACATGTAAA TAAATTTTTC TATTGGCTCT CTCTACTGTG TTCAGAGAGA TCTAACGCCA
  AGCTATATTT TACTAATTAA ACTTTGTGAA GTAGCAAGTC CTTCTTTTCA GAGAAAGGCT
  Y
  TCAATAGATT GTTCAGGCTG GGCTCAAGTG ATCATCCTGC CTCCACAGCC TCCAGTAGCC
  AGACCTGTCC ACCTCACGTC CACATTACCA TAGGAGCTCT TGGGCTGCCT TGGGCAGGAG
  AGGGCGGTGA CAGAATACAA GGTCTCACTA TACAGCACTG GCTAGACTGC CACCACTACC
  GCCACCACCA CCCTCCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45933025	mCV23495481	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss133233756	ENSMUSSNP1173134	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs30466991					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56879942 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm53332	predicted gene, 53332			within coordinates
Nt5c3	5'-nucleotidase, cytosolic III			Intron
				Noncoding-Transcript-Variant
Rr379412	regulatory region 379412			137 bp downstream
Rr631115	regulatory region 631115			1324 bp distal
Rr631116	regulatory region 631116			581 bp distal
Rr631117	regulatory region 631117			110 bp proximal
Rr631118	regulatory region 631118			194 bp proximal
Rr631119	regulatory region 631119			420 bp proximal
Rr631120	regulatory region 631120			732 bp proximal
Rr631121	regulatory region 631121			1934 bp proximal
Tssr1860	transcription start site region 1860			813 bp upstream
Tssr61149	transcription start site region 61149			1119 bp upstream
Tssr61150	transcription start site region 61150			1066 bp upstream
Tssr61151	transcription start site region 61151			1038 bp upstream