rs30465272 SNP Detail

Summary

• ID
  rs30465272
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17747359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGTCTCT AAGTTTTTTG
  ATGGCCAAAT CCCTCAGTTA CTTCAATGAC TTCATATACA GTGTCTTGTA CACAGTTTAG
  AGTATATCTT CCCCAGGGTA AAAGTTAACA AGCAAGCAAG CAAACAAACA AACAAATAAC
  ACATATGAGG TAAAGTTTGG CTTTAAGGTC CCACAACTCT AAAGTGTATT CCTATTCCCG
  M
  TTGCTGTAGG TTCCCCCCTC AACCTTATTA ATATTCCTCC TTAGCTGTTG GCTTGAACGT
  TTTTTGTTTT TTTTTTTTTT AAACAGGCAC ATTTTTATAT ATTTACAATT TAATTCATGC
  TGAGATTCTA TTACTTCTGT AATTTTTTAG TTTTCCTTGG TGACTTATTT TTTATGCATC
  TCTATCCACA TTTTCAACTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45933197	mCV22807003	ABI	CRAMUS_MOUSE	f	SNP		A	C					C		C
ss47815142	NES11712252	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C		C	C	C	C	A	A	C	A	C
ss133021941	ENSMUSSNP2087798	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30465272					SNP	A	A	C	C	C	C	C	C	C	C	C	C	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815142	NES11712252	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17747359 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42852	predicted gene 42852			162 bp downstream
Rr626852	regulatory region 626852			318 bp proximal
Rr626853	regulatory region 626853			1320 bp proximal
Rr626854	regulatory region 626854			1867 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr1786	transcription start site region 1786			1728 bp upstream
Tssr55095	transcription start site region 55095			1643 bp upstream
Tssr55096	transcription start site region 55096			1780 bp upstream
Tssr55097	transcription start site region 55097			1812 bp upstream