rs30465209 SNP Detail

Summary

• ID
  rs30465209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37432207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TACAGAGAAT TGTTGCCGGC CATCAGTCAC GTAGGGGCAG TGCACACAAG TCCCTCCTCA
  TGTAGATGAG GCATCTCAGG CCAAGTCAAT AGGAAGCTCC TGCCGTCAGA CCCACCCCAC
  CCCAGTGCTG TATATAAGAT CCTATCCAGA AGGAATGAAG GTGCGTGACA ATGACTCCGT
  AGTCTGAGAG CATCTGTCAC AAGAGCTGTA ACACTGCCTG GGAAGAGAAT GCTCTCCCAA
  AGCGTTCACC ACCAGACACT CCCCTGCACT CTACTTGCTA AACAGTCCCC CCTCCCCCAA
  R
  CCCCCAACCC ATAGGCTCAG CTCTGTTCAA TAGCTGGCAG CAGCACTTCC CCTCCCTGAT
  TGTGCCCTTT CCCCTTCACT TGAACCCTAC TGTCTGGCCA GGCCAGAGGT CTCTACGGAC
  AGCCTCTAGT ACACAGACCG ACACTCCCTT CCACAGTCTT CACATCTCAT TGTTTCCAGT
  GCTCTAATTA CCTATCTCTG TGTAATAAAT ATCTCTAGTC CCAACGCCCT AAAGTTAGCA
  TTTCATTGTT AATCATGTTC CTGAGTGGAC AGGGCTGAGC TCTGCAGGGT GCATCTCTCT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45433714	mCV24331101	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss134804152	ENSMUSSNP844114	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
ss320709675	CHEV_3_37276980	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30465209					SNP	A	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37432207 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fgf2	fibroblast growth factor 2			Intron
				Noncoding-Transcript-Variant
Gm43439	predicted gene 43439			within coordinates
Rr575470	regulatory region 575470			within coordinates
Rr575471	regulatory region 575471			1336 bp proximal