rs30464726 SNP Detail

Summary

• ID
  rs30464726
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148600219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACCCTTT TTGTCCCTAA
  ACTACAGACA AAATCATCAA CGTGCCGGGG CTATCATCTC TTCATGGGAC TTTTCCCGTT
  ATGTGAGAGG GCATTTTCAT CCAGGAGTGG CTCTTCTAGA ATGTGCCTGC TTGAAAACTG
  AAGGTGACCA TGGCAAACTA GTCTCCGGGT AAGGTCGGTC TTAGAGGGCA CAGCCTGCAG
  Y
  TCTGTGCCAG ACCCAAGCAG GAAGGATCCC AGAGCAGACT ACACTAGGAC ATGTGTGTTT
  GTGGAGAAAA ATACTAATTT ACTTACAGCC GTGATAGAGT GAAGATGTGC CAAGACCGTC
  TCCGGGGCCT TTTAAAAATA GTTTTATTTC TCTGTGGAGA CCCTGTATTT GTTAACTCTC
  TGTCATCATA ATTCCTCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47450826	NES10331253	PERLEGEN	MM_PANEL2	f	SNP		T	C	T	C	T	C	C	C	C	T	C
ss136065029	ENSMUSSNP708439	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30464726					SNP	C	T	C	T	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47450826	NES10331253	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148600219 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587222	regulatory region 587222	920 bp proximal
Rr587223	regulatory region 587223	1740 bp proximal