rs30464602 SNP Detail

Summary

• ID
  rs30464602
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108450725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGACTGGG CTGTGGGGTC CCTGAGACCT CTAGGAGAGG
  CGAGGCTGTG GAAACCTGGA AATGTGCAAG AGGAGTCCTG TGTAGGGGAC CTAAATATCC
  W
  CAGGTGGGGA GCCAGATGAT GGGAACCCAG AGACCTCCAG GAGAGGGTTC TGGGTTGGGG
  AACCTGACAC TGGCAGGTGA AAGCCTGGGC CTGGAGGAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45932546	mCV24650780	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		A
ss51813704	NES14768570	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		A	A	T	T	A	T	T	A	T
ss133503092	ENSMUSSNP3555607	ENSEMBL	ENSEMBL_Sanger	f	SNP										A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30464602					SNP	T	T	T	T	T	T	T	T	A	A	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51813704	NES14768570	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108450725 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	1158 bp upstream
Gm44101	predicted gene, 44101	1189 bp upstream
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636115	regulatory region 636115	1549 bp distal
Rr636116	regulatory region 636116	1120 bp distal
Rr636117	regulatory region 636117	567 bp distal
Tssr58061	transcription start site region 58061	721 bp downstream
Tssr58062	transcription start site region 58062	682 bp downstream
Tssr58063	transcription start site region 58063	663 bp downstream
Tssr58064	transcription start site region 58064	636 bp downstream
Tssr62386	transcription start site region 62386	1215 bp upstream