rs30464493 SNP Detail

Summary

• ID
  rs30464493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:168302049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAT GAAGGTTGAT CGTACATGAG
  Y
  GACGTTCTTG TCCATTGCTG AAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44931120	mCV23441028	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		T
ss49736497	NES13039646	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C	C		C	T	C	C		T	C	C	T		C
ss146067964	ENSMUSSNP2329370	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss320093839	CHEV_1_170404611	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30464493					SNP	C	C	C	C	T	C	C	T	C	T	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49736497	NES13039646	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:168302049 () rs orientation: forward

Symbol	Name	Function Class
Gm39696	predicted gene, 39696	1154 bp downstream
Rr422866	regulatory region 422866	189 bp distal
Rr422867	regulatory region 422867	1536 bp proximal
Rr422868	regulatory region 422868	1821 bp proximal