rs30464328 SNP Detail

Summary

• ID
  rs30464328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72284563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTG CCTTGTCAGA TGAGGATTGT
  Y
  CTCCCCACAA ATGGTCATGG CCTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45930652	mCV25198420	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss47978466	NES11923124	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T		C	T	C	C		C	C	C		C
ss133283802	ENSMUSSNP4397743	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss321821415	CHEV_6_72257573	CHEVERUD	SCREENING_POP	f	SNP													T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30464328					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978466	NES11923124	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72284563 () rs orientation: forward

Symbol	Name	Function Class
Rr632127	regulatory region 632127	889 bp proximal
Sftpb	surfactant associated protein B	Intron
Tssr57084	transcription start site region 57084	1919 bp downstream
Tssr57085	transcription start site region 57085	1682 bp downstream
Tssr57086	transcription start site region 57086	1637 bp downstream
Tssr57087	transcription start site region 57087	1602 bp downstream
Tssr57088	transcription start site region 57088	1550 bp downstream
Tssr57089	transcription start site region 57089	789 bp downstream
Tssr57090	transcription start site region 57090	714 bp downstream
Tssr57091	transcription start site region 57091	652 bp downstream
Tssr57092	transcription start site region 57092	367 bp downstream