rs30463540 SNP Detail

Summary

• ID
  rs30463540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8631132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACTAATT TCCATCTTCA
  GGGCACCTCC AGCAATGGCT ACAGCTCACA GAGGTACTCA AAACGGCACA TGCTGTCTGT
  CTCCCTCAAC CGAGAAGCAG CTTGGCTATT TCAGAAATCA GACTGAAGCA AGGTGCCTTC
  TGGTGTCTGC CGGAGGGTTC CCTTTAAGTC CCACGGGCCA GGAGCCATCT GCGGTTTCTC
  Y
  TTTCACCCTT CAAAGACGCA GGCCCACAGG AGGTCATACC CAGGCCCAGT CTCTCTACCA
  TTACAATCAC TGCCTTTCCT AGCTCTTCCT GTCAAAGGCT AGGTCCTTCC TTTCCCTTTC
  CCTTTCCCCT TCCCTTCTCC CTTCCCTTCC CTTCCCTTCA TGGGCTTGAA ATCCCCCCCG
  TTCAGCCTCA CTGGAGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45930043	mCV24759666	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		C
ss51549030	NES14865655	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		T	C	C	C	T	C	C	T	C
ss132972894	ENSMUSSNP2733086	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30463540					SNP	T	T	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51549030	NES14865655	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8631132 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ica1	islet cell autoantigen 1			Intron
				Noncoding-Transcript-Variant
Rr399563	regulatory region 399563			845 bp upstream
Rr626420	regulatory region 626420			394 bp proximal
Rr626421	regulatory region 626421			825 bp proximal