rs30462408 SNP Detail

Summary

• ID
  rs30462408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56545606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACCTCAG CGAGGAAATC
  GGTATAATTG AAAACCGATT TCAGCAGGAT GCCAGCTAAA GCAATAGAGT AGCTGGAACA
  AGCCACACTC CAGCTTCCCC GCCAGCAGGT CACGGTTTCC AGCGGCTCCC TCCAGCCAGC
  ACCCTCCAAC CCAGATTTCC GTGCCCACCC TCTCCCCGTT AGAATCTGCC ACTGTCACCG
  Y
  CACCGCCACT GTCGTGTGCG AGAACGCCAG GAACGGCCGG GGTGCAAAGT TCTCACCGAT
  GGTGAAGCTG TACCCGTCGA TGCTGAAAGT GGCGCTCCTA CATTTCTTGA AGCCCTCTTT
  CTTGTGGCTG GTGTCCGTCA TGACTCCTGC GTTCCCGGTC CTGGCTTGAG CCCGCGCCCA
  GCCTCCCTTC GCTGCACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45929933	mCV25430910	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss133228466	ENSMUSSNP469960	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30462408					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56545606 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66600	predicted gene, 66600			2 bp upstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631075	regulatory region 631075			within coordinates
Rr631076	regulatory region 631076			472 bp proximal
Tssr1858	transcription start site region 1858			530 bp downstream
Tssr61134	transcription start site region 61134			300 bp downstream
Tssr61135	transcription start site region 61135			321 bp downstream
Tssr61136	transcription start site region 61136			487 bp downstream
Tssr61137	transcription start site region 61137			562 bp downstream