rs30460112 SNP Detail

Summary

• ID
  rs30460112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97981240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAC CCGCTGTGTA TCTTGCTTGC
  Y
  GAGCCCCTGG AGTCTTGACT TAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45932293	mCV23116386	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
ss60914483	NES16220861	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		C	C	C	T	C	T	C	C	C
ss133422808	ENSMUSSNP5777543	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30460112					SNP	T	C	T	T	T	T	T	C	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60914483	NES16220861	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97981240 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635252	regulatory region 635252	779 bp distal
Rr635253	regulatory region 635253	889 bp distal
Rr635254	regulatory region 635254	724 bp distal
Rr635255	regulatory region 635255	1403 bp proximal
Rr635256	regulatory region 635256	1474 bp proximal
Tssr57947	transcription start site region 57947	477 bp upstream
Tssr57948	transcription start site region 57948	796 bp upstream