rs30459646 SNP Detail

Summary

• ID
  rs30459646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:110049287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGA TCCATAGCAG AGAGAAACTC
  Y
  ATGTCCCTAG TCGAATCCAT CAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45432998	mCV22910356	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss135590370	ENSMUSSNP965164	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T		C
ss320871735	CHEV_3_109944889	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30459646					SNP	T	T	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110049287 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13719	CpG island 13719			279 bp proximal
Ntng1	netrin G1			Intron
				Noncoding-Transcript-Variant
Rr583463	regulatory region 583463			within coordinates
Rr583464	regulatory region 583464			122 bp distal
Rr583465	regulatory region 583465			52 bp proximal
Rr583466	regulatory region 583466			962 bp proximal
Rr583467	regulatory region 583467			1023 bp proximal
Tssr1022	transcription start site region 1022			1435 bp upstream
Tssr35233	transcription start site region 35233			773 bp downstream
Tssr35234	transcription start site region 35234			1025 bp downstream
Tssr35235	transcription start site region 35235			1542 bp downstream
Tssr35236	transcription start site region 35236			1591 bp downstream
Tssr35237	transcription start site region 35237			1709 bp downstream
Tssr35238	transcription start site region 35238			1727 bp downstream
Tssr35239	transcription start site region 35239			1815 bp downstream
Tssr35240	transcription start site region 35240			1966 bp downstream