rs30459643 SNP Detail

Summary

• ID
  rs30459643
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108824309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATGCAATG GCACATGTGT GGAGGTCAGA GGGACAGCGT
  GCAGGAGTTG GTTCTTTCTT ACTGTGTTAT CGCAGGAATG GAATCTAGTT GTTCATTCTC
  S
  ATGGCAACCT TTCTTGCCAA ACGTCTTCCT TGAGTTTAAA AATGTAGGGG GTGGAGTGTC
  ACTGGAGAGG TCTGTCTGGC CTGGTATTCA TTTGGACCC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45931896	mCV24064230	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30459643					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108824309 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr636224	regulatory region 636224			241 bp proximal