rs30459488 SNP Detail

Summary

• ID
  rs30459488
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95497846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTTTTCT TTTTCTTTTT
  TGAATGAATT CTTTCTTTAA AAAGACTTAT TTTAGTTCTT GCCCTCTTGG TCTCTTGCTC
  CTCCCTTGCT CTTTCCCTGC TTCCCTTCCC CTTTCTCTCC CCATTCCCGT CCCACCTCTC
  TCTCCACGTG CTCATGACTC CTCTACTTCT CTACTCTCTT TCTCTGCCTC TACTACCCTC
  K
  TAACTCCCCT CCCCATGCCC TTAATAAACC CTATTCTATA CTTAAAAAAA AAAAGACATT
  CTATTTATTT CATGTATATG AGTACACTGT CTGAAGAAGT CACACCAGAA GAGGGCATCA
  GATCCCATTA CAGATGGTTG TCAGCCACCA TGTGATTGCT GGGAATTGAA CTCAGGACTT
  CTGGAAGAGC AGTCAGTGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45432145	mCV23591887	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G
ss135512299	ENSMUSSNP5847719	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30459488					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95497846 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm40097	predicted gene, 40097			1718 bp upstream
Gm42671	predicted gene 42671			within coordinates
Golph3l	golgi phosphoprotein 3-like			Intron
				Noncoding-Transcript-Variant
Rr397841	regulatory region 397841			1641 bp downstream
Rr580976	regulatory region 580976			1734 bp distal
Rr580977	regulatory region 580977			1535 bp distal
Rr580978	regulatory region 580978			1706 bp distal
Rr580979	regulatory region 580979			1296 bp distal
Rr580980	regulatory region 580980			101 bp proximal
Tssr30603	transcription start site region 30603			1582 bp downstream
Tssr30604	transcription start site region 30604			1547 bp downstream
Tssr30605	transcription start site region 30605			1526 bp downstream
Tssr30606	transcription start site region 30606			1491 bp downstream