rs30459268 SNP Detail

Summary

• ID
  rs30459268
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:38537371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCA TAATAGGTTT TGTTTGGTTT
  Y
  GTATCGTTTA AATCTTCAGT GTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45431668	mCV22716822	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss134837197	ENSMUSSNP3991356	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320719951	CHEV_3_38382144	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30459268					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38537371 () rs orientation: forward

Symbol	Name	Function Class
Ankrd50	ankyrin repeat domain 50	mRNA-UTR
Cpgi13104	CpG island 13104	1073 bp proximal
Gm65619	predicted gene, 65619	1883 bp upstream
Rr397648	regulatory region 397648	1527 bp upstream
Rr575674	regulatory region 575674	1792 bp distal
Rr575675	regulatory region 575675	1003 bp proximal
Rr575676	regulatory region 575676	1612 bp proximal
Rr575677	regulatory region 575677	1894 bp proximal
Tssr28929	transcription start site region 28929	1973 bp upstream
Tssr33057	transcription start site region 33057	1557 bp downstream
Tssr33058	transcription start site region 33058	1580 bp downstream
Tssr33059	transcription start site region 33059	1609 bp downstream