rs30458738 SNP Detail

Summary

• ID
  rs30458738
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:40990024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAG GTATATGACT CAGTAGTGTG
  M
  ATGCGTGTCT AGCATGCACA AAGCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss39693953	mCV23121539	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss146399240	ENSMUSSNP1741578	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C		C
ss325808746	CHEV_19_41076071	CHEVERUD	SCREENING_POP	f	SNP				A		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30458738					SNP	A	C	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:40990024 () rs orientation: forward

Symbol	Name	Function Class
Gm59161	predicted gene, 59161	within coordinates
Rr547536	regulatory region 547536	1554 bp distal
Rr547537	regulatory region 547537	1772 bp distal
Tssr159239	transcription start site region 159239	1094 bp upstream