rs30458176 SNP Detail

Summary

• ID
  rs30458176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148643287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTATTAT TTATGTGTTC
  ATGCATGAAT GTGTCTAAGT ATATATGTAT GTGGGCACAC ACATGTCGGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTCTGTGTGT ATGTGTGTAT GTGTGTGTGT GCATGCACAG
  TCAGGCATAC ATGAGTACAG GTCACAGAAA AGCTTTCTGG GAGCCAGTTT TTTCCATCTA
  Y
  CATGTATTCC AGAGATTTAA CCAAGGTCAT CATGCTGAGC AATAGCTCCC AGGTCCAATA
  ATGACAATTC TAAAAAGAAG AAAATTTGAA ATTTTATTAT GAAAATAAAA CACAGGCTCA
  AGCTAAACAA CTTGTACAAG TCCACTAGGG TGGTAAATGT GAGTTAAGCT ATGACCCACC
  AGGCTGGACA GATGGCTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss47450046	NES10330385	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C	C	T	T	T		C	T	C	C
ss321016867	CHEV_3_148600615	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30458176					SNP	T	C	T	C	T	C	C	T	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47450046	NES10330385	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148643287 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587231	regulatory region 587231	1673 bp proximal