rs30457342 SNP Detail

Summary

• ID
  rs30457342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78502566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATT TGAAAACCAG AGAGACCAAC
  R
  GCGACTTTTC TGGCGCAGTC TTCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45431737	mCV23542536	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss135359217	ENSMUSSNP3374752	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320807543	CHEV_3_78399181	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30457342					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78502566 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	313 bp upstream
Rr578423	regulatory region 578423	324 bp distal
Rr578424	regulatory region 578424	within coordinates
Tssr33603	transcription start site region 33603	894 bp upstream
Tssr33604	transcription start site region 33604	840 bp upstream
Tssr33605	transcription start site region 33605	825 bp upstream
Tssr33606	transcription start site region 33606	810 bp upstream
Tssr33607	transcription start site region 33607	737 bp upstream
Tssr33608	transcription start site region 33608	642 bp upstream