rs30456930 SNP Detail

Summary

• ID
  rs30456930
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:34076111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCT TTTGGTGTCT TTTTTTTTTT
  W
  AAAGTTATTT CACAAGCAAA TATCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45430570	mCV22842564	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss134762084	ENSMUSSNP3090854	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss320700971	CHEV_3_33920884	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30456930					SNP	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34076111 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	907 bp distal
Fxr1	FMR1 autosomal homolog 1	Intron
Rr575096	regulatory region 575096	1844 bp distal
Rr575097	regulatory region 575097	738 bp distal
Tssr28789	transcription start site region 28789	1999 bp downstream
Tssr28790	transcription start site region 28790	1880 bp downstream
Tssr28791	transcription start site region 28791	1852 bp downstream