rs30456525 SNP Detail

Summary

• ID
  rs30456525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148644357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGAGTG CTGAGTGAAA
  GCACATAGGG ACTAAGTCAG TACAAATGAC AATAAATGTC AGAGTGTGAG TTGCAATGAT
  GTATGCTGGG AAATTTCCAT CTACCATTGT GTGGTCACCA CAGCGGCTAG GAGAACTCTC
  AAAGGCCAAG AGAAGTTACA GGAAGCCAAA TAAAATGTTC CTACTCTAGA CACTTAGCAC
  Y
  TCATTATCTT CCAATAATAT AAAGATTAGA AAAATGAAAT ATATATAAAA TCGTTAGTAG
  AAAATACATC AAGAAAATGC ACCGCCCACG GGATAAGCAA AAGATAGAAC ATACACTCTT
  CTAGAAAAAA TATTTACATT AGTCAAGAAA GCACAATTAA CCAAACTAAT TAAAGTATCA
  TTCTGTGAGC CAAGTTCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45491033	mCV22572788	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss47450025	NES10330370	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T		T	C	C	C		C	T
ss136065520	ENSMUSSNP3009594	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321016871	CHEV_3_148601685	CHEVERUD	SCREENING_POP	f	SNP												T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30456525					SNP	C	T	C	T	C	T	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47450025	NES10330370	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148644357 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587231	regulatory region 587231	603 bp proximal