rs30455893 SNP Detail

Summary

• ID
  rs30455893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:55449741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTT CTATTCCCGT GAATAAGCCA
  Y
  TTATCCATGT ATGCTGGATG GGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45430660	mCV22823988	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135188636	ENSMUSSNP2356037	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss320775356	CHEV_3_55346242	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30455893					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55449741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13189	CpG island 13189	440 bp proximal
Gm31796	predicted gene, 31796	within coordinates
Gm53179	predicted gene, 53179	1166 bp upstream
Rr576965	regulatory region 576965	1953 bp distal
Rr576966	regulatory region 576966	1045 bp distal
Rr576967	regulatory region 576967	within coordinates
Rr576968	regulatory region 576968	221 bp proximal
Rr576969	regulatory region 576969	1616 bp proximal