rs30454879 SNP Detail

Summary

• ID
  rs30454879
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30069481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA CCTTTGAGGT TTTTGTTGTT
  K
  TTGTTTGTTT TGTTTTGTTT TCTCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45430354	mCV22689463	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss134728252	ENSMUSSNP5073605	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30454879					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30069481 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D3Mit46	DNA segment, Chr 3, Massachusetts Institute of Technology 46			1728 bp distal
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1			1607 bp distal
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3			1857 bp distal
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574703	regulatory region 574703			1591 bp distal
Rr574704	regulatory region 574704			within coordinates
Rr574705	regulatory region 574705			96 bp proximal
Rr574706	regulatory region 574706			1299 bp proximal
Tssr32880	transcription start site region 32880			1992 bp upstream
Tssr32881	transcription start site region 32881			1963 bp upstream
Tssr32882	transcription start site region 32882			1933 bp upstream
Tssr32883	transcription start site region 32883			942 bp upstream