rs30454007 SNP Detail

Summary

• ID
  rs30454007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8950325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAC TTGGTAAGTG GCGATCGGTC
  Y
  GGTCCGGCAT CTTTGAGATA CCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45929072	mCV24757252	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss132976328	ENSMUSSNP3960600	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss321738446	CHEV_6_8900325	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30454007					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8950325 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17155	CpG island 17155			906 bp distal
Cpgi17156	CpG island 17156			within coordinates
Cpgi17157	CpG island 17157			729 bp proximal
Nxph1	neurexophilin 1			Intron
				Noncoding-Transcript-Variant
Rr626455	regulatory region 626455			1701 bp distal
Rr626456	regulatory region 626456			1675 bp distal
Rr626457	regulatory region 626457			639 bp distal
Rr626458	regulatory region 626458			1250 bp proximal
Tssr54925	transcription start site region 54925			1887 bp downstream
Tssr54926	transcription start site region 54926			1723 bp downstream
Tssr54927	transcription start site region 54927			1706 bp downstream
Tssr54928	transcription start site region 54928			1396 bp downstream
Tssr54929	transcription start site region 54929			1362 bp downstream
Tssr54930	transcription start site region 54930			1257 bp downstream
Tssr54931	transcription start site region 54931			639 bp downstream
Tssr54932	transcription start site region 54932			495 bp downstream