rs30453715 SNP Detail

Summary

• ID
  rs30453715
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87700705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTT CCCTGATCCC AGCCTTGTTC
  S
  CCATAGGATG GCTATGTGTC TGTCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45430941	mCV23486615	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C	C
ss135468206	ENSMUSSNP3490960	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30453715					SNP	C	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87700705 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13339	CpG island 13339	1065 bp proximal
Ntrk1	neurotrophic tyrosine kinase, receptor, type 1	Intron
Rr579548	regulatory region 579548	1754 bp proximal
Rr579549	regulatory region 579549	1850 bp proximal
Tssr33956	transcription start site region 33956	1808 bp downstream