rs30453108 SNP Detail

Summary

• ID
  rs30453108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152633138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAAGAAA CCATTTTGGC
  TATTTTAGCA GAGAGTTCAG TGTTTGACGA GTCAGGTGAT TTCTGGTCTT TGCTTTAGTG
  ACAGCTCTCC TCAGACCCTC AGCTTCATCT GGTAAGAAGT GACCGGATGG ATTTGGGAAT
  GCTTATTGTT GAGCATGGGA GAAATGCTAA ACATGGCATG TCGAGGAAAT CAATCTAATA
  Y
  GCATATATTA AGAGAAGCAG GGCTTAATTG TACTCGTGGC TGCACCAGCA GGGGCTGGAG
  AGGGCTAGGC TTTATAGGCA CCCACTGTTC TCTGTAACTT GAATTAAAAG GCATCAAAAT
  GCCTTGGTCT ACTGGTTGCT CTAGGCCTTT ATTGGAAACC CTGAGTGTTT TTCTATAGAT
  CCTAGCACCA GAGGTCTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45429844	mCV22358377	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss136104939	ENSMUSSNP5135548	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss321029239	CHEV_3_152590465	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30453108					SNP	T	T	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152633138 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm46830	predicted gene, 46830	within coordinates
Gm66995	predicted gene, 66995	1393 bp upstream
Rr587626	regulatory region 587626	955 bp distal
Rr587627	regulatory region 587627	949 bp proximal
Rr587628	regulatory region 587628	1404 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32427	transcription start site region 32427	1388 bp upstream