rs30452929 SNP Detail

Summary

• ID
  rs30452929
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:67424332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAG AGGCCAGGAT ACCTGTTCCC
  R
  CTCCTGCCAC AAATGCCAAT GAGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45431024	mCV27557832	ABI	CRAMUS_MOUSE	f	SNP	A		A	A	G
ss135258426	ENSMUSSNP1601145	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30452929					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67424332 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13247	CpG island 13247	1118 bp distal
Gm40067	predicted gene, 40067	within coordinates
Rarres1	retinoic acid receptor responder (tazarotene induced) 1	1476 bp upstream
Rr577936	regulatory region 577936	1448 bp distal
Rr577937	regulatory region 577937	1131 bp distal
Rr577938	regulatory region 577938	1328 bp distal
Tssr33502	transcription start site region 33502	1515 bp upstream
Tssr33503	transcription start site region 33503	1497 bp upstream
Tssr33504	transcription start site region 33504	1345 bp upstream
Tssr33505	transcription start site region 33505	1299 bp upstream
Tssr33506	transcription start site region 33506	1262 bp upstream