rs30451599 SNP Detail

Summary

• ID
  rs30451599
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95562333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGTCATA AAAATACTTG
  CTTAATTTAT GTAAGGGATG AAGGGAGCAA CAGACATTCT TCTAAGTTTG GGCTTTTGTA
  CTGTGCAAAC CCTACTGGAG AGGCTGGCTG CCTGGCCTAG CAGGCTGTTA CAGTTACCAC
  TGCAGGATTC TTGTGACATT CATGGAAGTT TTTAGAAAAC AAAAAACAAA ACAAAAAAAA
  W
  TTTTTTTTTT TTTTGTATTC TCTTTCTTGG GTGGTGAGTG GAGATGTCTG CTTTTGATTA
  ATGGGGTCCT ATTATAGGCT AAGCTGGCCA GGAGGTGGGT GAGCTCCAGC CTCTAAGCTT
  GATGTCTTCA TCTCAACAGT CCTGGGATTA CAGACATACA CTTACCTCCA CAGCAATCTA
  TGGGGTGCCA CAGGCCAAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45430921	mCV23592584	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss135512485	ENSMUSSNP1909887	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30451599					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95562333 () rs orientation: forward

Symbol	Name	Function Class
Gm64625	predicted gene, 64625	1198 bp upstream
Gm65002	predicted gene, 65002	696 bp downstream
Rr366848	regulatory region 366848	within coordinates
Rr580999	regulatory region 580999	1141 bp distal
Rr581000	regulatory region 581000	866 bp distal
Tssr971	transcription start site region 971	1225 bp upstream
Tssr30620	transcription start site region 30620	1259 bp downstream
Tssr30621	transcription start site region 30621	1115 bp downstream
Tssr30622	transcription start site region 30622	1098 bp downstream
Tssr30623	transcription start site region 30623	1089 bp downstream
Tssr30624	transcription start site region 30624	1151 bp upstream
Tssr34506	transcription start site region 34506	1297 bp upstream