rs30450901 SNP Detail

Summary

• ID
  rs30450901
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127623447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTTTCAC CAGACACTGG
  TAGTGGCTAG AACTACTGTT GTAACGTAAG AGGGTCAGAC TGTACAAAAG TTCCTGAATC
  TATTTAAGAA AAAAAAAGTG CAAACCAGAA TAGAAGATCT GATTTTTTTT TCTAGCATGC
  TTACAAGGGG AAAGCCTCAG TCCCTGTCTT CGTATTTGTA TAATGTGAGG ACAGATACTC
  K
  ATTCTTTGGG AAGAGATGGC GTTTCTTCGA TACAGATTTC AAACAGTAGG ATTAAGAGAA
  AGAAAAGACA CAGAGTTAGG AAAGCAGGTA CGGGCCAAGC TTCTCGACTT CCAATTAATT
  TCATTTATGA CGATAATACA TCAGGACCAT TAGACATCTC CCACGTTCAG AGCCGTCCAA
  GTTCTTGGAG GTATGACTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45431003	mCV23993972	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G
ss135872306	ENSMUSSNP1955083	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		G
ss320957256	CHEV_3_127532716	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30450901					SNP	T	T	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127623447 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	within coordinates
Rr584871	regulatory region 584871	421 bp proximal
Rr584872	regulatory region 584872	1011 bp proximal