rs30450552 SNP Detail

Summary

• ID
  rs30450552
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153429758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAGTTGC ATTCTGTGAT
  ACCAATGGAT TATTTCCTCC TAACTTTGCC ACCCTTGGGG AAAAAAAAAG AAAAGAAAAG
  GCGTGGAAAG TGTTCCAAAA CAAACGGCAA GCTCAGGAAA GTCACAATAA GGGTCTGCTG
  CCTCGCTTCA TGAGAGGGAA GGATGACTGG TACAACTTCA ACAGCAGCCC AAGACTATAT
  K
  AAGTGCTACG ACACACAAGA CTGTTCTGTG TGGCCCTTGG TCACACAGCA CCTTCTCGGG
  GCTGGAAACC GAACACCTTA GTTTTCTCTC CGGGATGGGA AACCTTCATG CTGCTCAAGT
  TTGGATCCAC GGAGTCAGAC TGGGCAACTG AATAAGGACA GCGAGGAAAA ACCAGAACAG
  GCTAGGGAGT GAACTTTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	MOLF/EiJ	NZW/LacJ
ss45430914	mCV23571635	ABI	CRAMUS_MOUSE	f	SNP	G	T				T
ss47467081	NES10328069	PERLEGEN	MM_PANEL2	f	SNP			T	T	G		T	T	T
ss136111689	ENSMUSSNP1189985	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	MOLF/EiJ	NZW/LacJ
rs30450552					SNP	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467081	NES10328069	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153429758 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587739	regulatory region 587739			209 bp distal
Rr587740	regulatory region 587740			within coordinates
Rr587741	regulatory region 587741			1043 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32435	transcription start site region 32435			208 bp downstream
Tssr36240	transcription start site region 36240			983 bp downstream