rs30449878 SNP Detail

Summary

• ID
  rs30449878
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27247952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCCAACA CTCATGACAC
  AAAGGCAAGT AATACTGAGA ACTCAAGGCC AGACTGAGCT ACCTGAGTTA GCCTGGGCTA
  TGTACAACAC CTCATCCCAG AAAATTAGAT CCAGCCAACC ATTCGAACAA GCATGGCTTT
  TCTGTACTTT ATGTAACACT AAGGATTATG AAAGATGTCC CTACTGCCTC ATTTAATATA
  K
  TAAAGACACA AAACAAAGCA GTTAACTGGC TTCCATTGCT GTGTGCCTTG TGCTCTGTTC
  TGACTTTATC TCCCATCAGC AGTCCTCTAC CCAGCTTCCT GTCCCCCAAC AGCCTTGCTG
  TGAGTTTGTT TGTCCTTGTG TGTGTGACAC CTTGTCTCCT GTCCCCATGC CTCAGAGGCC
  CCGCTTACCC TCTTGCTTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45430301	mCV27552825	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G	G
ss134702665	ENSMUSSNP4009358	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30449878					SNP	G	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27247952 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574362	regulatory region 574362			1610 bp distal
Rr574363	regulatory region 574363			within coordinates
Tssr28610	transcription start site region 28610			1657 bp downstream
Tssr28611	transcription start site region 28611			457 bp upstream
Tssr28612	transcription start site region 28612			562 bp upstream
Tssr28613	transcription start site region 28613			891 bp upstream
Tssr32839	transcription start site region 32839			1859 bp upstream
Tssr32840	transcription start site region 32840			1817 bp upstream
Tssr32841	transcription start site region 32841			266 bp downstream
Tssr32842	transcription start site region 32842			321 bp downstream
Tssr32843	transcription start site region 32843			392 bp downstream