rs30449473 SNP Detail

Summary

• ID
  rs30449473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125643392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGATTCAA ATACTATAGA
  GAAGTCATTA TCATTTGAGA TATAGGTGAC AAATGCTATA GCCTTCAGAA TTATATATAT
  ATATATATAC TATATAATAT ATAGTATATA ATGAATAATA TATTATATAT AATATATATA
  CACACACATA TATATGTGTG TGTATATATA TATAACTTCT TTCACCTACA AGGCAGTTCA
  R
  CTGGGCCTGG TCACATCGTA ATGAGTATCA CTACAAGTTG CAAGAAGCAG AAGTCTAATT
  TTACATTTAA TTGATTTAAA ATATGAAGGC ATAAAGTTTA AAATAATAAT GGTATAATTT
  ACAGCATAAA GTTCTGTGGT GGAATTTCTT TAAGAGGAAA TTCCGTGCAA CATGCACGAA
  TAATTTTTTT TTGAAAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46949586	NES10674577	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A	G	G		G	G		G
ss135817795	ENSMUSSNP2556290	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
ss320940435	CHEV_3_125552661	CHEVERUD	SCREENING_POP	f	SNP										G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30449473					SNP	G	G	A	G	A	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46949586	NES10674577	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125643392 () rs orientation: forward

Symbol	Name	Function Class
Rr584614	regulatory region 584614	259 bp distal
Rr584615	regulatory region 584615	382 bp distal