rs30449470 SNP Detail

Summary

• ID
  rs30449470
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125643094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGTATTT TGATGAAGCA
  CATAGATTAT TAAATTTCCT TGTTAGGGCC TGCACTTCCC AAAGCTTTGG AAAATGTGTG
  TAACTAAATC TGTGCTTGAC CACTAGATGT CACCAAAGGA TTGTTCACTG AAACAGGCAA
  GCGGTGCCTG TCAGAAAAAC CATTTCCTCT ATTTTTCAAT GTAATCGAGA AGCAACAGTC
  K
  TAGCATAATA TTCTTAATAA TGCCCGCCTC CTTGGTGTCT CACTATTATG CTTTTATGTG
  CAACATTCTT TTTTGAAACA GTCTTTAAAT AATAAAAAAT GATTCAAATA CTATAGAGAA
  GTCATTATCA TTTGAGATAT AGGTGACAAA TGCTATAGCC TTCAGAATTA TATATATATA
  TATATACTAT ATAATATATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46949583	NES10674647	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	T	G	T	G	G		G	G		G
ss135817765	ENSMUSSNP5745657	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					G
ss320940429	CHEV_3_125552363	CHEVERUD	SCREENING_POP	f	SNP									G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30449470					SNP	G	T	G	T	G	T	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46949583	NES10674647	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125643094 () rs orientation: forward

Symbol	Name	Function Class
Rr584614	regulatory region 584614	within coordinates
Rr584615	regulatory region 584615	84 bp distal