rs30447836 SNP Detail

Summary

• ID
  rs30447836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125641321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCATTAA TAAATGTCAT
  CAATATTCAA AGTCTGTGAC AATCTCAGTA GGAAGAAAAT CCTGAACAAG AGACATACAT
  GCTGGTCTTA AACAGAAAAA TTCTGTAAGA CGAAGAAAGT AACCACATAA GAGTGAAAGT
  TGCCATTGCA TAAATCCAGA CTTTTAAAGG ATTACTTAAA ATACAAATGA AAATTGGCAT
  R
  CATAGGAGCT TAGTAAAGAC TTTGGAATAA ATGGAATTTA CCCTAAATTT TTGATCTTGC
  ATTTCAAAAT ATTGTCTGCT CACAAAGTGA GAGGATTGAG TTGGGTGGAG CCAGGCTGAC
  TCCCTGACAG GCTGCAAGCT GGCAGTTTGG GAGACTAGGC CTAAGTTTCT CAAATCTGGA
  AAAGTCCAAA ACAAGTCAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46949559	NES10674785	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A	G	G		A	G	G		G
ss135817750	ENSMUSSNP4099048	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					G
ss320940407	CHEV_3_125550590	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30447836					SNP	G	A	G	A	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46949559	NES10674785	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125641321 () rs orientation: forward

Symbol	Name	Function Class
Rr584614	regulatory region 584614	1568 bp proximal
Rr584615	regulatory region 584615	1668 bp proximal