rs30444167 SNP Detail

Summary

• ID
  rs30444167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132791259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGTTAAAA CTGGATTCTG CTACCTAGCT AGCGCAAGCC
  CTGTAGCATC TTTCCATCTC ACTGCAATAA CAGTCCAGCT TTCTACAGTG CCGTAAGCAG
  R
  CCTGGACTTA ATCCTTTTAT GTCTCCTGAG TTCATCTTAA TTTTTCTCAT TGCTTACTGC
  ATCCCCAAAA GTGAACTAAG ATTCGCTAGA ATTCTGACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45429188	mCV25027853	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	A
ss135916504	ENSMUSSNP2754224	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30444167					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132791259 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gstcd	glutathione S-transferase, C-terminal domain containing			Intron
				Noncoding-Transcript-Variant
Rr398027	regulatory region 398027			430 bp upstream
Rr585498	regulatory region 585498			441 bp proximal
Rr585499	regulatory region 585499			547 bp proximal