rs30435365 SNP Detail

Summary

• ID
  rs30435365
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:53773352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTGGGCA TGAATAGTCA
  ACAAACTTAC TTTGTTCAGA GTTTCTGTTA TATGTACACA ACACAGTGAC TACAAGATTC
  AACCCCAAAT GGTATGCAAC TTCAATAGTC AGATGCTAAG GCTACTCCAG AAATACCGTA
  CTGCATCAAA ATAAAATCGA AGGCTCCTAA GACACACCTG AGACTGGAAT GTTACAGGCA
  R
  CTTTAGAACA GATTTTGGGA GGGGCATATA TGAGCTTCCT TCCAAGTGGC TCCACCTCTC
  CCCTAACCAA ACCAAGCTGC TGATTTAAGT CCCCTAAGTT ATGTATGTGT CAGTTGTTTC
  TTGTGCTATA CCCCATGTTT GATAGTCTAT AGTCTGGGCC TCAGTTTCTC GCTTGGTCTA
  CTTGCCCTCT TTCCTCTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss46947721	NES10814863	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30435365					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46947721	NES10814863	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53773352 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13168	CpG island 13168	1761 bp distal
Rr367439	regulatory region 367439	1693 bp downstream
Rr576757	regulatory region 576757	1611 bp distal