rs30434599 SNP Detail

Summary

• ID
  rs30434599
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:53773272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCCAGGC CTGCCCCATC
  TCTGGGGAAA GGGCTTAAGA AGAAGTCTGT GAGCATGGCA GGGACAGCCC TCCTGCCACT
  CAAGTGGGCA TGAATAGTCA ACAAACTTAC TTTGTTCAGA GTTTCTGTTA TATGTACACA
  ACACAGTGAC TACAAGATTC AACCCCAAAT GGTATGCAAC TTCAATAGTC AGATGCTAAG
  R
  CTACTCCAGA AATACCGTAC TGCATCAAAA TAAAATCGAA GGCTCCTAAG ACACACCTGA
  GACTGGAATG TTACAGGCAA CTTTAGAACA GATTTTGGGA GGGGCATATA TGAGCTTCCT
  TCCAAGTGGC TCCACCTCTC CCCTAACCAA ACCAAGCTGC TGATTTAAGT CCCCTAAGTT
  ATGTATGTGT CAGTTGTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss46947715	NES10814860	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30434599					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46947715	NES10814860	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53773272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13168	CpG island 13168	1681 bp distal
Rr367439	regulatory region 367439	1613 bp downstream
Rr576757	regulatory region 576757	1531 bp distal