rs30433723 SNP Detail

Summary

• ID
  rs30433723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:53772659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATATCAA GGCCTGTATC
  TTCTAACAGC TAAAACTACA TAGTTAATGT GTATGACTAA AGTCTTGTCT CTGAAGACAA
  AATTACCTGT CTACCCGTGC CATCTATTGA AATAACACAA AGTTAGAATA CAAATTTTGG
  TTTGTTTCTA AGAATACACA TATATTTTAA ATAAAATTTG TATCTGCTCA AGTATGGAAC
  Y
  ATGTGACACA ACGCTGAAAA GGACACCATA AGTCTTGGAT GGAAAGTCGT CCTGGCAGTC
  CAGAGCCAAG GAATACCACA AAGTCACACT ACACAACACA CTTCACCCGG GAGATTCATT
  GGGAGGGGAG AACCCAGGAG GGTGGCTGCC TCTGCTAGGA TGAGAAACAG ACAAGCAGCA
  GAAAACCCGG CAAAACATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss46947709	NES10815026	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30433723					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46947709	NES10815026	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53772659 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13168	CpG island 13168	1068 bp distal
Rr367439	regulatory region 367439	1000 bp downstream
Rr576756	regulatory region 576756	1483 bp distal
Rr576757	regulatory region 576757	918 bp distal
Tssr33277	transcription start site region 33277	1408 bp upstream
Ufm1	ubiquitin-fold modifier 1	1431 bp upstream