rs30432761 SNP Detail

Summary

• ID
  rs30432761
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53770979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGAGTGT TCGGGTCGGA
  CCTGTCAAAA GTCCAGACTT GGGAAGTCCT CCCTAACTTC CGGTAACAGC TGGTCCAGGT
  AAAGACCTTT AAATCAAGTA AACGGGTTCC ATCCTCGTCC AACCTTCTTC CCGTTGCACC
  TGCCCACCCA GAGCGTTGCG AGGGGCCACT GGCTTTCAGC AGAAATGCCG CACCCTTCCT
  M
  CTGTCCCCCT CTGTCCCGCC AGGCCCGGCC AGCTCCAGCC CTGCCTGTCA CTCACACTTT
  GTACGGCAGC CGCGGGTCCG ACGTCAACGT GATTTTAAAG GACACCTTCG ACCTGCCGGA
  GAGAACGAGA AGGCGTTACG GTCGGGACCG GCCACGGGGT TAAGGCCGGG ACACAGGGAC
  GGATACTTAC ATGGTGGAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss46947697	NES10815022	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30432761					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46947697	NES10815022	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53770979 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13168	CpG island 13168	within coordinates
Rr367439	regulatory region 367439	379 bp upstream
Rr576756	regulatory region 576756	within coordinates
Rr576757	regulatory region 576757	198 bp proximal
Tssr33277	transcription start site region 33277	206 bp downstream
Ufm1	ubiquitin-fold modifier 1	Intron