rs30432758 SNP Detail

Summary

• ID
  rs30432758
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53770594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATGGATC ACGGGTGGGA
  AACTTCAGAA AACGATGACA GCTGCTCTCA GCTCAGTTAG CTGGGCCTTG GTGCCACCAA
  ACCCGTCATG AATGAAATCT ATGGAAACCC TGGTCTGTCG CAGGTTAGCA TAGGTCTTCC
  AGCTGCAGGA ACTCAAAAGG GGTCAACTTA AAAATCATAC TAAGATGGAG CTGGGTAACC
  Y
  GTGTTAGCCA TCAACTGAAC TGCTGAAGCA CAAGGAAGGG CCCAACAAGG ACACAAGGTC
  CTACACCCCC ATTTCCCAAT CCCGCTAAGC ACTTTTTATA AAGATCCAAG TGTGTGTGAC
  TGGGAGTTCA GCACCTAGGC ACCCAGTCGT TGTGTTTATA CACAACAAAG CAAAAAAACT
  GAAGTTAAGA GTGTTCGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss46947694	NES10815021	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30432758					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46947694	NES10815021	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53770594 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13168	CpG island 13168	191 bp proximal
Rr367439	regulatory region 367439	764 bp upstream
Rr576756	regulatory region 576756	within coordinates
Rr576757	regulatory region 576757	583 bp proximal
Tssr33277	transcription start site region 33277	591 bp downstream
Ufm1	ubiquitin-fold modifier 1	Intron