rs30428879 SNP Detail

Summary

• ID
  rs30428879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57753930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAGCAAAG AAATTAAGAG AATGGTCCTG TACTTGATAC
  TGGTGTCAAA ATCTTAAAGA GCATTGCATA GAAACAAGCA TAACAATAAG CAGTGTTGGA
  R
  ACTGGTTGAC GAATATTCTC CAAATGTGTG GCAACCCAGT CAAAAGCCAT CAAGTCACAT
  GAAAAGGAGG CACCGTGAAG CATAAATCGG TATTAGTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45428947	mCV22719347	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss135204811	ENSMUSSNP5173129	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30428879					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57753930 () rs orientation: forward

Symbol	Name	Function Class
Gm66316	predicted gene, 66316	1418 bp upstream
Pfn2	profilin 2	Intron
Rr577167	regulatory region 577167	642 bp distal
Rr577168	regulatory region 577168	141 bp distal
Rr577169	regulatory region 577169	626 bp proximal
Rr577170	regulatory region 577170	1560 bp proximal
Rr577171	regulatory region 577171	1605 bp proximal
Tssr33340	transcription start site region 33340	969 bp downstream
Tssr33341	transcription start site region 33341	1181 bp downstream
Tssr33342	transcription start site region 33342	1215 bp downstream
Tssr33343	transcription start site region 33343	1571 bp downstream