rs30426665 SNP Detail

Summary

• ID
  rs30426665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72282115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAT GCAGGAGCTG TGAGTAGCAC
  Y
  AAGCGGGCAC TGGAAATCCA GGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss45928949	mCV22350912	ABI	CRAMUS_MOUSE	f	SNP		T	T					C
ss47978434	NES11924130	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	C	C	T	C		C		T
ss133283790	ENSMUSSNP4997954	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
ss321821407	CHEV_6_72255125	CHEVERUD	SCREENING_POP	f	SNP											C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs30426665					SNP	T	T	T	C	T	T	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978434	NES11924130	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72282115 () rs orientation: forward

Symbol	Name	Function Class
Rr632126	regulatory region 632126	501 bp distal
Sftpb	surfactant associated protein B	Intron
Tssr57078	transcription start site region 57078	817 bp downstream
Tssr57079	transcription start site region 57079	801 bp downstream
Tssr57080	transcription start site region 57080	508 bp downstream
Tssr57081	transcription start site region 57081	486 bp downstream
Tssr57082	transcription start site region 57082	84 bp downstream
Tssr57083	transcription start site region 57083	43 bp downstream
Tssr57084	transcription start site region 57084	512 bp upstream
Tssr57085	transcription start site region 57085	721 bp upstream
Tssr57086	transcription start site region 57086	799 bp upstream
Tssr57087	transcription start site region 57087	836 bp upstream
Tssr57088	transcription start site region 57088	849 bp upstream
Tssr57089	transcription start site region 57089	1650 bp upstream
Tssr57090	transcription start site region 57090	1703 bp upstream
Tssr57091	transcription start site region 57091	1777 bp upstream