rs30424435 SNP Detail

Summary

• ID
  rs30424435
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:89323142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGGCCAT CCAGGCTCAG
  GAGGCCCTGC CCCCAGCCTG CCAGCTTAAT TGACTGGGAC AGGTGGTCTC AACAGCTGCA
  GTTGGGGGCT TGTGAGTTCA GCTGTCCATC CACCTGCCCA GCAATGGTCC ACATGCACAA
  CCAGGTCCTA GGGACACAGC CCAGTAGAGG CTAACTCCAG GGAGGGACCA CTGGCAGAGC
  R
  TGGATACCAT TCCTCAGCTA GGGGAATTGT GGGCATCAGG GAGGTTATAG ACATGAGTGT
  GTTGCAGTAC TCTGCATTGA GCCAAGCCAT GCTCAGGCCT GACAGGACCT TTGTGCACAT
  CAGTGTCACA GTGTCTCTGG GTACATATGT GATGATGGAG TTTATGTTTT GAATATGAAA
  TGCCTGCCAT AGGCTCATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45928630	mCV24907332	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss133371905	ENSMUSSNP3316949	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30424435					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89323142 () rs orientation: forward

Symbol	Name	Function Class
Gm44207	predicted gene, 44207	within coordinates
Plxna1	plexin A1	Intron
Rr634109	regulatory region 634109	within coordinates
Rr634110	regulatory region 634110	1723 bp proximal